Isomorphic Labs IsoDDE vs AlphaFold vs Insilico Medicine

A side-by-side look at scores, pricing and features — with RECATOOLS' ASEAN-aware verdict for each.

Isomorphic Labs IsoDDE DeepMind's AI Drug Design Engine that doubles AlphaFold 3 accuracy in... Visit AlphaFold Google DeepMind's protein-structure prediction AI — the Nobel-winning... Visit Insilico Medicine AI that took a drug from concept to Phase III — now backed by Lilly. Visit
RECATOOLS Score 8.2 / 10 8.5 / 10 8.7 / 10
Capability 9.5 9.5
Value for money 4 7
Ease of use 3.5 6.5
ASEAN readiness 3 7.5
API quality 2 7
Pricing Enterprise Free Enterprise
Free tier None — no free or academic tier publicly available Free AlphaFold Server (non-commercial) plus the open AlphaFold Protein Structure Database; AF3 model code released for non-commercial use. Chemistry42 cloud offers academic/startup access tiers; contact required
Paid from Enterprise partnership only; deals structured around R&D milestones (not per-seat or API) Enterprise licensing; upfront deals from $10M milestone to $115M (Lilly)
Has API
Open source
Free to use
Users Not publicly disclosed; access limited to pharma partnership cohort 3M+ researchers 13 of top 20 global pharma cos; 18.3% YoY subscription growth (2025)
Founded 2021 2014
Maker Alphabet Inc. (via Google DeepMind spinoff) Google DeepMind Insilico Medicine (independent; HKEX: 3696)
Verdict

Isomorphic Labs IsoDDE represents a genuine scientific leap in AI-driven drug design — its 50% accuracy on the hardest protein-ligand prediction benchmark, outperformance of physics-based gold standards in binding affini...

What this is for: Predicting the 3D structure of proteins and their complexes with DNA, RNA and small molecules, accelerating structural biology and drug discovery. Who this is for: Academic and non-commercial researche...

Insilico Medicine holds a lead no other AI-native drug company currently matches: a molecule it designed from scratch has reached Phase III, with published peer-reviewed efficacy data behind it. The Pharma.AI stack — Pan...

Full review → Full review → Full review →
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Comparisons cover up to 4 tools. Scores are RECATOOLS editorial assessments; verify current pricing on each vendor's site.